All functions

BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.

COmonthlyMet CO.elev CO.id CO.loc CO.names CO.ppt CO.ppt.MAM CO.tmax CO.tmax.MAM CO.tmin CO.tmin.MAM CO.years CO.ppt.MAM.climate CO.tmax.MAM.climate CO.tmean.MAM.climate CO.tmin.MAM.climate CO.elevGrid CO.Grid

Monthly surface meterology for Colorado 1895-1997

CO2

Simulated global CO2 observations

ExponentialUpper()

Evaluate covariance over upper triangle of distance matrix

Exponential() Matern() Matern.cor.to.range() RadialBasis()

Covariance functions

Krig.Amatrix()

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.

Krig() fitted(<Krig>) coef(<Krig>) resid.Krig()

Kriging surface estimate

Krig.engine.default() Krig.engine.fixed() Krig.coef() Krig.make.u() Krig.check.xY() Krig.transform.xY() Krig.make.W() Krig.make.Wi()

Basic linear algebra utilities and other computations supporting the Krig function.

Krig.null.function()

Default function to create fixed matrix part of spatial process model.

Krig.replicates()

Collapse repeated spatial locations into unique locations

KrigFindLambda() gcv.sreg()

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.

NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.

QTps() QSreg()

Robust and Quantile smoothing using a thin-plate spline

RCMexample

3-hour precipitation fields from a regional climate model

RMprecip RMelevation PRISMelevation

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).

Tps() fastTps()

Thin plate spline regression

US()

Plot of the US with state boundaries

US.dat

Outline of coterminous US and states.

Wendland() Wendland2.2() Wendland.beta() wendland.eval() fields.pochup() fields.pochdown() fields.D()

Wendland family of covariance functions and supporting numerical functions

WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.

add.image()

Adds an image to an existing plot.

arrow.plot()

Adds arrows to a plot

as.image()

Creates image from irregular x,y,z

as.surface()

Creates an "surface" object from grid values.

bplot()

boxplot

bplot.xy()

Boxplots for conditional distribution

colorbar.plot()

Adds color scale strips to an existing plot.

compactToMat()

Convert Matrix from Compact Vector to Standard Form

cover.design()

Computes Space-Filling "Coverage" designs using Swapping Algorithm

drape.plot() drape.color()

Perspective plot draped with colors in the facets.

envelopePlot()

Add a shaded the region between two functions to an existing plot

Exp.cov() Exp.simple.cov() Rad.cov() cubic.cov() Rad.simple.cov() stationary.cov() stationary.taper.cov() wendland.cov()

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.

fields.duplicated.matrix() fields.mkpoly() fields.derivative.poly() fields.evlpoly() fields.evlpoly2()

Fields supporting functions

fields-package fields

fields - tools for spatial data

mKrig.grid

Using MKrig for predicting on a grid.

fields.style() fields.color.picker()

fields - graphics hints

test.for.zero()

Testing fields functions

flame

Response surface experiment ionizing a reagent

glacier

Franke's Glacier Elevation Data

makeMultiIndex() parse.grid.list() fields.x.to.grid() fields.convert.grid() discretize.image() make.surface.grid() unrollZGrid()

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.

stationary.image.cov() Exp.image.cov() Rad.image.cov() matern.image.cov() wendland.image.cov()

Exponential, Matern and general covariance functions for 2-d gridded locations.

image(<plot>)

Draws an image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.

image(<smooth>) setup.image.smooth()

Kernel smoother for irregular 2-d data

crop.image() which.max.matrix() which.max.image() get.rectangle() average.image() half.image() in.poly() in.poly.grid()

Some simple functions for subsetting images

imagePlot() colorBar() setupLegend() addLegend() addColorBarTriangle()

Draws an image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.

interp.surface() interp.surface.grid()

Fast bilinear interpolator from a grid.

lennon

Gray image of John Lennon.

mKrig() predict(<mKrig>) summary(<mKrig>) print(<mKrig>) print(<mKrigSummary>) mKrig.coef() mKrig.trace() mKrigCheckXY()

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.

mKrigMLEGrid() mKrigMLEJoint() profileCI() mKrigJointTemp.fn()

Maximizes likelihood for the process marginal variance (sigma) and nugget standard deviation (tau) parameters (e.g. lambda) over a many covariance models or covariance parameter values.

minitri

Mini triathlon results

offGridWeights() offGridWeights1D() offGridWeights2D() addMarginsGridList() mKrigFastPredictSetup()

Utilities for fast spatial prediction.

ChicagoO3 ozone

Data set of ozone measurements at 20 Chicago monitoring stations.

ozone2

Daily 8-hour ozone averages for sites in the Midwest

plot(<Krig>) plot(<sreg>)

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.

plot(<surface>)

Plots a surface

poly.image() poly.image.regrid()

Image plot for cells that are irregular quadrilaterals.

predict(<Krig>) predictDerivative.Krig() predict(<Tps>) predict(<fastTps>)

Evaluation of Krig spatial process estimate.

predictSE()

Standard errors of predictions for Krig spatial process estimate

predictSurface(<default>) predictSurface(<fastTps>) predictSurface(<Krig>) predictSurface(<mKrig>) mKrigFastPredict() predictSurfaceSE(<default>) predict(<surface>)

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.

print(<Krig>)

Print kriging fit results.

pushpin()

Adds a "push pin" to an existing 3-d plot

qsreg()

Quantile or Robust spline regression

quilt.plot() bubblePlot()

Useful plots for visualizing irregular spatial data.

rat.diet

Experiment studying an appetite supressant in rats.

rdist() fields.rdist.near() rdist.vec()

Euclidean distance matrix or vector

rdist.earth() RdistEarth() rdist.earth.vec()

Great circle distance matrix or vector

addToDiagC ExponentialUpperC compactToMatC multebC multwendlandg mltdrb RdistC distMatHaversin distMatHaversin2

Information objects that register C and FORTRAN functions.

ribbon.plot()

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.

set.panel()

Specify a panel of plots

simSpatialData() sim.spatialProcess() sim.Krig() simLocal.spatialProcess() checkPredictGrid() makePredictionGridList() makeSimulationGrid()

Unconditional and conditional simulation of a spatial process

sim.rf() circulantEmbedding() circulantEmbeddingSetup()

Efficiently Simulates a Stationary 1 and 2D Gaussian random fields

smooth.2d()

Kernel smoother for irregular 2-d data

spind2full() spam2full() spind2spam() spam2spind()

Conversion of formats for sparse matrices

spatialProcess() summary(<spatialProcess>) print(<spatialProcess>) print(<spatialProcessSummary>) plot(<spatialProcess>) spatialProcessSetDefaults() confidenceIntervalMLE() profileMLE()

Estimates a spatial process model.

splint()

Cubic spline interpolation

sreg() predict(<sreg>)

Cubic smoothing spline regression

stats()

Calculate summary statistics

stats.bin()

Bins data and finds some summary statistics.

summary(<Krig>)

Summary for Krig or spatialProcess estimated models.

summary(<ncdf>)

Summarizes a netCDF file handle

supportsArg()

Tests if function supports a given argument

surface(<Krig>) surface(<mKrig>)

Plots a surface and contours

tim.colors() larry.colors() snow.colors() two.colors() designer.colors() color.scale() fieldsPlotColors()

Some useful color tables for images and tools to handle them.

transformx()

Linear transformation

vgram() crossCoVGram() boxplotVGram() plot(<vgram>) getVGMean()

Traditional or robust variogram methods for spatial data

vgram.matrix() plot(<vgram.matrix>)

Computes a variogram from an image

world() world.land() world.color() in.land.grid()

Plot of the world

xline()

Draw a vertical line

yline()

Draw horizontal lines